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Combination of Ada Boost and SMOTE operators

ozgeozyazarozgeozyazar Member Posts: 21 Maven
edited June 2019 in Help
Hi ! 

I am currently dealing with imbalanced data for my classification problem. I have read couple of articles that uses boost based ensembles. I would like to use combination of Adaboost and SMOTE but I am note sure that if I correctly applied it. Please find xml version below. If you have any idea to improve this process or if you believe that those algorithms applied incorrectly, could you please help me ?


Özge 

<?xml version="1.0" encoding="UTF-8"?><process version="8.0.001">
  <context>
    <input/>
    <output/>
    <macros/>
  </context>
  <operator activated="true" class="process" compatibility="8.0.001" expanded="true" name="Process">
    <process expanded="true">
      <operator activated="true" class="read_excel" compatibility="8.0.001" expanded="true" height="68" name="Read Excel" width="90" x="45" y="34">
        <parameter key="excel_file" value="C:\Users\AngelsChange\Desktop\SPSS-TEZ\Descriptive 2\MICRO\KNN-MICRO.xlsx"/>
        <parameter key="imported_cell_range" value="A1:AL1102"/>
        <parameter key="first_row_as_names" value="false"/>
        <list key="annotations">
          <parameter key="0" value="Name"/>
        </list>
        <list key="data_set_meta_data_information">
          <parameter key="0" value="DISEASE_DURATION.true.integer.attribute"/>
          <parameter key="1" value="AGE.true.integer.attribute"/>
          <parameter key="2" value="WEIGHT.true.numeric.attribute"/>
          <parameter key="3" value="HEIGHT.true.real.attribute"/>
          <parameter key="4" value="BMIkgm2.true.numeric.attribute"/>
          <parameter key="5" value="FPG.true.integer.attribute"/>
          <parameter key="6" value="PBG.true.numeric.attribute"/>
          <parameter key="7" value="HbA1c.true.numeric.attribute"/>
          <parameter key="8" value="FPG_HbA1c.true.numeric.attribute"/>
          <parameter key="9" value="PBG_HbA1c.true.numeric.attribute"/>
          <parameter key="10" value="TColl.true.numeric.attribute"/>
          <parameter key="11" value="TG.true.numeric.attribute"/>
          <parameter key="12" value="HDLK.true.numeric.attribute"/>
          <parameter key="13" value="LDLK.true.numeric.attribute"/>
          <parameter key="14" value="LDL_HDL.true.numeric.attribute"/>
          <parameter key="15" value="TColl_HDL.true.numeric.attribute"/>
          <parameter key="16" value="Cr.true.numeric.attribute"/>
          <parameter key="17" value="ALB.true.numeric.attribute"/>
          <parameter key="18" value="ALB_CR.true.numeric.attribute"/>
          <parameter key="19" value="GFR.true.numeric.attribute"/>
          <parameter key="20" value="CCI_A.true.numeric.attribute"/>
          <parameter key="21" value="GENDER.true.binominal.attribute"/>
          <parameter key="22" value="BACKGROUND_INFORMATION.false.integer.attribute"/>
          <parameter key="23" value="FAMILY_HEALTH_STORY.false.integer.attribute"/>
          <parameter key="24" value="INSULINE_TREATMENT.false.integer.attribute"/>
          <parameter key="25" value="BMI_DEGREE.false.integer.attribute"/>
          <parameter key="26" value="PATIENTS_STATUS.false.integer.attribute"/>
          <parameter key="27" value="SMOKING_HABIT.false.integer.attribute"/>
          <parameter key="28" value="HYPERTENSION.false.integer.attribute"/>
          <parameter key="29" value="MACRO.false.integer.attribute"/>
          <parameter key="30" value="CODISEASE.false.integer.attribute"/>
          <parameter key="31" value="HBA1C_DEGREE.false.integer.attribute"/>
          <parameter key="32" value="GLUCOSE_LEVEL_RISK_DEGREE.false.integer.attribute"/>
          <parameter key="33" value="LIPID_PROFILE.false.integer.attribute"/>
          <parameter key="34" value="CREATININE_DEGREE.false.integer.attribute"/>
          <parameter key="35" value="ALBUMIN_DEGREE.false.integer.attribute"/>
          <parameter key="36" value="GFR_DEGREE.true.polynominal.attribute"/>
          <parameter key="37" value="MICRO.true.binominal.attribute"/>
        </list>
      </operator>
      <operator activated="false" class="detect_outlier_distances" compatibility="8.0.001" expanded="true" height="82" name="Detect Outlier (Distances)" width="90" x="246" y="238"/>
      <operator activated="false" class="filter_examples" compatibility="8.0.001" expanded="true" height="103" name="Filter Examples" width="90" x="246" y="238">
        <list key="filters_list">
          <parameter key="filters_entry_key" value="outlier.equals.false"/>
        </list>
      </operator>
      <operator activated="true" class="set_role" compatibility="8.0.001" expanded="true" height="82" name="Set Role" width="90" x="179" y="34">
        <parameter key="attribute_name" value="MICRO"/>
        <parameter key="target_role" value="label"/>
        <list key="set_additional_roles"/>
      </operator>
      <operator activated="false" class="multiply" compatibility="8.0.001" expanded="true" height="68" name="Multiply" width="90" x="246" y="238"/>
      <operator activated="false" class="concurrency:optimize_parameters_grid" compatibility="8.0.001" expanded="true" height="124" name="Optimize Parameters (Grid)" width="90" x="246" y="238">
        <list key="parameters">
          <parameter key="Binomial (2).main_criterion" value="first,accuracy,classification_error,kappa,AUC (optimistic),AUC (optimistic),AUC,AUC (pessimistic),precision,recall,lift,fallout,f_measure,false_positive,false_negative,true_positive,true_negative,sensitivity,specificity,youden,positive_predictive_value,negative_predictive_value,psep"/>
        </list>
        <process expanded="true">
          <operator activated="true" class="concurrency:cross_validation" compatibility="8.0.001" expanded="true" height="145" name="Cross Validation (2)" width="90" x="179" y="34">
            <parameter key="number_of_folds" value="80"/>
            <process expanded="true">
              <operator activated="true" class="add_noise" compatibility="8.0.001" expanded="true" height="103" name="Add Noise" width="90" x="45" y="34">
                <list key="noise"/>
              </operator>
              <operator activated="true" class="concurrency:parallel_decision_tree" compatibility="8.0.001" expanded="true" height="103" name="Decision Tree (2)" width="90" x="179" y="34">
                <parameter key="criterion" value="gini_index"/>
                <parameter key="maximal_depth" value="9"/>
                <parameter key="confidence" value="0.35"/>
                <parameter key="apply_prepruning" value="false"/>
                <parameter key="minimal_gain" value="0.136"/>
              </operator>
              <connect from_port="training set" to_op="Add Noise" to_port="example set input"/>
              <connect from_op="Add Noise" from_port="example set output" to_op="Decision Tree (2)" to_port="training set"/>
              <connect from_op="Decision Tree (2)" from_port="model" to_port="model"/>
              <portSpacing port="source_training set" spacing="0"/>
              <portSpacing port="sink_model" spacing="0"/>
              <portSpacing port="sink_through 1" spacing="0"/>
            </process>
            <process expanded="true">
              <operator activated="true" class="apply_model" compatibility="8.0.001" expanded="true" height="82" name="Apply Model (2)" width="90" x="45" y="34">
                <list key="application_parameters"/>
              </operator>
              <operator activated="true" class="performance_classification" compatibility="8.0.001" expanded="true" height="82" name="Classification" width="90" x="179" y="238">
                <list key="class_weights"/>
              </operator>
              <operator activated="false" class="performance" compatibility="8.0.001" expanded="true" height="82" name="Performance (2)" width="90" x="179" y="34"/>
              <operator activated="false" class="performance_binominal_classification" compatibility="8.0.001" expanded="true" height="82" name="Binomial (2)" width="90" x="179" y="136">
                <parameter key="classification_error" value="true"/>
                <parameter key="kappa" value="true"/>
                <parameter key="AUC (optimistic)" value="true"/>
                <parameter key="AUC" value="true"/>
                <parameter key="AUC (pessimistic)" value="true"/>
                <parameter key="precision" value="true"/>
                <parameter key="recall" value="true"/>
                <parameter key="f_measure" value="true"/>
                <parameter key="false_positive" value="true"/>
                <parameter key="false_negative" value="true"/>
                <parameter key="true_positive" value="true"/>
                <parameter key="true_negative" value="true"/>
                <parameter key="sensitivity" value="true"/>
                <parameter key="specificity" value="true"/>
                <parameter key="youden" value="true"/>
                <parameter key="positive_predictive_value" value="true"/>
                <parameter key="negative_predictive_value" value="true"/>
              </operator>
              <connect from_port="model" to_op="Apply Model (2)" to_port="model"/>
              <connect from_port="test set" to_op="Apply Model (2)" to_port="unlabelled data"/>
              <connect from_op="Apply Model (2)" from_port="labelled data" to_op="Classification" to_port="labelled data"/>
              <connect from_op="Classification" from_port="performance" to_port="performance 1"/>
              <connect from_op="Classification" from_port="example set" to_port="test set results"/>
              <portSpacing port="source_model" spacing="0"/>
              <portSpacing port="source_test set" spacing="0"/>
              <portSpacing port="source_through 1" spacing="0"/>
              <portSpacing port="sink_test set results" spacing="0"/>
              <portSpacing port="sink_performance 1" spacing="0"/>
              <portSpacing port="sink_performance 2" spacing="0"/>
            </process>
          </operator>
          <operator activated="true" class="log" compatibility="8.0.001" expanded="true" height="82" name="Log" width="90" x="447" y="85">
            <parameter key="filename" value="C:\Users\AngelsChange\Desktop\log 1.log"/>
            <list key="log">
              <parameter key="Perfomance 2" value="operator.Cross Validation (2).value.performance main criterion"/>
              <parameter key="Criterion" value="operator.Cross Validation (2).value.applycount"/>
            </list>
          </operator>
          <connect from_port="input 1" to_op="Cross Validation (2)" to_port="example set"/>
          <connect from_op="Cross Validation (2)" from_port="performance 1" to_op="Log" to_port="through 1"/>
          <connect from_op="Log" from_port="through 1" to_port="performance"/>
          <portSpacing port="source_input 1" spacing="0"/>
          <portSpacing port="source_input 2" spacing="0"/>
          <portSpacing port="sink_performance" spacing="0"/>
          <portSpacing port="sink_model" spacing="0"/>
          <portSpacing port="sink_output 1" spacing="0"/>
        </process>
      </operator>
      <operator activated="true" class="concurrency:optimize_parameters_grid" compatibility="8.0.001" expanded="true" height="124" name="Optimize Parameters (4)" width="90" x="380" y="34">
        <list key="parameters">
          <parameter key="SMOTE Upsampling (3).number_of_neighbours" value="[1.0;100.0;10;linear]"/>
        </list>
        <process expanded="true">
          <operator activated="true" class="concurrency:cross_validation" compatibility="8.0.001" expanded="true" height="145" name="Cross Validation" width="90" x="112" y="34">
            <parameter key="number_of_folds" value="61"/>
            <process expanded="true">
              <operator activated="true" class="adaboost" compatibility="8.0.001" expanded="true" height="82" name="AdaBoost" width="90" x="112" y="34">
                <process expanded="true">
                  <operator activated="true" breakpoints="after" class="operator_toolbox:smote" compatibility="1.7.000" expanded="true" height="82" name="SMOTE Upsampling (3)" width="90" x="112" y="34">
                    <parameter key="number_of_neighbours" value="1"/>
                  </operator>
                  <operator activated="true" class="concurrency:parallel_decision_tree" compatibility="8.0.001" expanded="true" height="103" name="Decision Tree" width="90" x="246" y="34">
                    <parameter key="criterion" value="gini_index"/>
                    <parameter key="maximal_depth" value="100"/>
                    <parameter key="apply_prepruning" value="false"/>
                    <parameter key="minimal_gain" value="0.136"/>
                  </operator>
                  <connect from_port="training set" to_op="SMOTE Upsampling (3)" to_port="exa"/>
                  <connect from_op="SMOTE Upsampling (3)" from_port="ups" to_op="Decision Tree" to_port="training set"/>
                  <connect from_op="Decision Tree" from_port="model" to_port="model"/>
                  <portSpacing port="source_training set" spacing="0"/>
                  <portSpacing port="sink_model" spacing="0"/>
                </process>
              </operator>
              <connect from_port="training set" to_op="AdaBoost" to_port="training set"/>
              <connect from_op="AdaBoost" from_port="model" to_port="model"/>
              <portSpacing port="source_training set" spacing="0"/>
              <portSpacing port="sink_model" spacing="0"/>
              <portSpacing port="sink_through 1" spacing="0"/>
            </process>
            <process expanded="true">
              <operator activated="true" class="apply_model" compatibility="8.0.001" expanded="true" height="82" name="Apply Model" width="90" x="45" y="34">
                <list key="application_parameters"/>
              </operator>
              <operator activated="false" class="multiply" compatibility="8.0.001" expanded="true" height="68" name="Multiply (2)" width="90" x="45" y="187"/>
              <operator activated="true" class="performance_binominal_classification" compatibility="8.0.001" expanded="true" height="82" name="Binomial" width="90" x="179" y="34">
                <parameter key="main_criterion" value="false_negative"/>
                <parameter key="classification_error" value="true"/>
                <parameter key="kappa" value="true"/>
                <parameter key="AUC (optimistic)" value="true"/>
                <parameter key="AUC" value="true"/>
                <parameter key="AUC (pessimistic)" value="true"/>
                <parameter key="precision" value="true"/>
                <parameter key="recall" value="true"/>
                <parameter key="lift" value="true"/>
                <parameter key="fallout" value="true"/>
                <parameter key="f_measure" value="true"/>
                <parameter key="false_positive" value="true"/>
                <parameter key="false_negative" value="true"/>
                <parameter key="true_positive" value="true"/>
                <parameter key="true_negative" value="true"/>
                <parameter key="sensitivity" value="true"/>
                <parameter key="specificity" value="true"/>
                <parameter key="youden" value="true"/>
                <parameter key="positive_predictive_value" value="true"/>
                <parameter key="negative_predictive_value" value="true"/>
                <parameter key="psep" value="true"/>
              </operator>
              <operator activated="true" class="performance_classification" compatibility="8.0.001" expanded="true" height="82" name="Performance (3)" width="90" x="313" y="34">
                <parameter key="main_criterion" value="logistic_loss"/>
                <parameter key="classification_error" value="true"/>
                <parameter key="kappa" value="true"/>
                <parameter key="weighted_mean_recall" value="true"/>
                <parameter key="weighted_mean_precision" value="true"/>
                <parameter key="spearman_rho" value="true"/>
                <parameter key="kendall_tau" value="true"/>
                <parameter key="absolute_error" value="true"/>
                <parameter key="relative_error" value="true"/>
                <parameter key="relative_error_lenient" value="true"/>
                <parameter key="relative_error_strict" value="true"/>
                <parameter key="normalized_absolute_error" value="true"/>
                <parameter key="root_mean_squared_error" value="true"/>
                <parameter key="root_relative_squared_error" value="true"/>
                <parameter key="squared_error" value="true"/>
                <parameter key="correlation" value="true"/>
                <parameter key="squared_correlation" value="true"/>
                <parameter key="cross-entropy" value="true"/>
                <parameter key="margin" value="true"/>
                <parameter key="soft_margin_loss" value="true"/>
                <parameter key="logistic_loss" value="true"/>
                <list key="class_weights"/>
              </operator>
              <connect from_port="model" to_op="Apply Model" to_port="model"/>
              <connect from_port="test set" to_op="Apply Model" to_port="unlabelled data"/>
              <connect from_op="Apply Model" from_port="labelled data" to_op="Binomial" to_port="labelled data"/>
              <connect from_op="Binomial" from_port="performance" to_op="Performance (3)" to_port="performance"/>
              <connect from_op="Binomial" from_port="example set" to_op="Performance (3)" to_port="labelled data"/>
              <connect from_op="Performance (3)" from_port="performance" to_port="performance 1"/>
              <portSpacing port="source_model" spacing="0"/>
              <portSpacing port="source_test set" spacing="0"/>
              <portSpacing port="source_through 1" spacing="0"/>
              <portSpacing port="sink_test set results" spacing="0"/>
              <portSpacing port="sink_performance 1" spacing="0"/>
              <portSpacing port="sink_performance 2" spacing="0"/>
            </process>
          </operator>
          <operator activated="true" class="log" compatibility="8.0.001" expanded="true" height="82" name="Log 1" width="90" x="313" y="85">
            <parameter key="filename" value="C:\Users\AngelsChange\Desktop\Optimization-DT.log"/>
            <list key="log">
              <parameter key="neıghbor" value="operator.SMOTE Upsampling (2).parameter.number_of_neighbours"/>
              <parameter key="rate" value="operator.SMOTE Upsampling (2).parameter.nominal_change_rate"/>
            </list>
          </operator>
          <connect from_port="input 1" to_op="Cross Validation" to_port="example set"/>
          <connect from_op="Cross Validation" from_port="performance 1" to_op="Log 1" to_port="through 1"/>
          <connect from_op="Log 1" from_port="through 1" to_port="performance"/>
          <portSpacing port="source_input 1" spacing="0"/>
          <portSpacing port="source_input 2" spacing="0"/>
          <portSpacing port="sink_performance" spacing="0"/>
          <portSpacing port="sink_model" spacing="0"/>
          <portSpacing port="sink_output 1" spacing="0"/>
        </process>
      </operator>
      <operator activated="false" class="concurrency:cross_validation" compatibility="8.0.001" expanded="true" height="145" name="Cross Validation (3)" width="90" x="246" y="238">
        <parameter key="number_of_folds" value="61"/>
        <process expanded="true">
          <operator activated="true" class="operator_toolbox:smote" compatibility="1.7.000" expanded="true" height="82" name="SMOTE Upsampling" width="90" x="112" y="136">
            <parameter key="nominal_change_rate" value="0.2"/>
          </operator>
          <operator activated="true" class="concurrency:parallel_decision_tree" compatibility="8.0.001" expanded="true" height="103" name="Decision Tree (4)" width="90" x="246" y="85">
            <parameter key="criterion" value="gini_index"/>
            <parameter key="maximal_depth" value="100"/>
            <parameter key="apply_prepruning" value="false"/>
            <parameter key="minimal_gain" value="0.136"/>
          </operator>
          <connect from_port="training set" to_op="SMOTE Upsampling" to_port="exa"/>
          <connect from_op="SMOTE Upsampling" from_port="ups" to_op="Decision Tree (4)" to_port="training set"/>
          <connect from_op="Decision Tree (4)" from_port="model" to_port="model"/>
          <portSpacing port="source_training set" spacing="0"/>
          <portSpacing port="sink_model" spacing="0"/>
          <portSpacing port="sink_through 1" spacing="0"/>
        </process>
        <process expanded="true">
          <operator activated="true" class="apply_model" compatibility="8.0.001" expanded="true" height="82" name="Apply Model (3)" width="90" x="45" y="34">
            <list key="application_parameters"/>
          </operator>
          <operator activated="false" class="multiply" compatibility="8.0.001" expanded="true" height="68" name="Multiply (3)" width="90" x="45" y="187"/>
          <operator activated="true" class="performance_binominal_classification" compatibility="8.0.001" expanded="true" height="82" name="Binomial (3)" width="90" x="179" y="34">
            <parameter key="main_criterion" value="false_negative"/>
            <parameter key="classification_error" value="true"/>
            <parameter key="kappa" value="true"/>
            <parameter key="AUC (optimistic)" value="true"/>
            <parameter key="AUC" value="true"/>
            <parameter key="AUC (pessimistic)" value="true"/>
            <parameter key="precision" value="true"/>
            <parameter key="recall" value="true"/>
            <parameter key="lift" value="true"/>
            <parameter key="fallout" value="true"/>
            <parameter key="f_measure" value="true"/>
            <parameter key="false_positive" value="true"/>
            <parameter key="false_negative" value="true"/>
            <parameter key="true_positive" value="true"/>
            <parameter key="true_negative" value="true"/>
            <parameter key="sensitivity" value="true"/>
            <parameter key="specificity" value="true"/>
            <parameter key="youden" value="true"/>
            <parameter key="positive_predictive_value" value="true"/>
            <parameter key="negative_predictive_value" value="true"/>
            <parameter key="psep" value="true"/>
          </operator>
          <operator activated="true" class="performance_classification" compatibility="8.0.001" expanded="true" height="82" name="Performance (4)" width="90" x="313" y="34">
            <parameter key="main_criterion" value="logistic_loss"/>
            <parameter key="classification_error" value="true"/>
            <parameter key="kappa" value="true"/>
            <parameter key="weighted_mean_recall" value="true"/>
            <parameter key="weighted_mean_precision" value="true"/>
            <parameter key="spearman_rho" value="true"/>
            <parameter key="kendall_tau" value="true"/>
            <parameter key="absolute_error" value="true"/>
            <parameter key="relative_error" value="true"/>
            <parameter key="relative_error_lenient" value="true"/>
            <parameter key="relative_error_strict" value="true"/>
            <parameter key="normalized_absolute_error" value="true"/>
            <parameter key="root_mean_squared_error" value="true"/>
            <parameter key="root_relative_squared_error" value="true"/>
            <parameter key="squared_error" value="true"/>
            <parameter key="correlation" value="true"/>
            <parameter key="squared_correlation" value="true"/>
            <parameter key="cross-entropy" value="true"/>
            <parameter key="margin" value="true"/>
            <parameter key="soft_margin_loss" value="true"/>
            <parameter key="logistic_loss" value="true"/>
            <list key="class_weights"/>
          </operator>
          <connect from_port="model" to_op="Apply Model (3)" to_port="model"/>
          <connect from_port="test set" to_op="Apply Model (3)" to_port="unlabelled data"/>
          <connect from_op="Apply Model (3)" from_port="labelled data" to_op="Binomial (3)" to_port="labelled data"/>
          <connect from_op="Binomial (3)" from_port="performance" to_op="Performance (4)" to_port="performance"/>
          <connect from_op="Binomial (3)" from_port="example set" to_op="Performance (4)" to_port="labelled data"/>
          <connect from_op="Performance (4)" from_port="performance" to_port="performance 1"/>
          <portSpacing port="source_model" spacing="0"/>
          <portSpacing port="source_test set" spacing="0"/>
          <portSpacing port="source_through 1" spacing="0"/>
          <portSpacing port="sink_test set results" spacing="0"/>
          <portSpacing port="sink_performance 1" spacing="0"/>
          <portSpacing port="sink_performance 2" spacing="0"/>
        </process>
      </operator>
      <connect from_port="input 1" to_op="Read Excel" to_port="file"/>
      <connect from_op="Read Excel" from_port="output" to_op="Set Role" to_port="example set input"/>
      <connect from_op="Set Role" from_port="example set output" to_op="Optimize Parameters (4)" to_port="input 1"/>
      <connect from_op="Optimize Parameters (4)" from_port="performance" to_port="result 1"/>
      <portSpacing port="source_input 1" spacing="0"/>
      <portSpacing port="source_input 2" spacing="0"/>
      <portSpacing port="sink_result 1" spacing="0"/>
      <portSpacing port="sink_result 2" spacing="0"/>
      <portSpacing port="sink_result 3" spacing="0"/>
    </process>
  </operator>
</process>

Tagged:

Answers

  • Options
    varunm1varunm1 Moderator, Member Posts: 1,207 Unicorn
    edited May 2019
    Hello @ozgeozyazar

    The process looks fine for me, actually using SMOTE inside the validation is recommended as it avoids overfitting. Are you facing any errors?

    Thanks,
    Varun
    Regards,
    Varun
    https://www.varunmandalapu.com/

    Be Safe. Follow precautions and Maintain Social Distancing

  • Options
    ozgeozyazarozgeozyazar Member Posts: 21 Maven

    Dear @varunm1,

    I have not get any error but I would like to be sure this model works it is aimed. Actually my main consern is using AdaBoost with SMOTE operator is an applicable approach or not ?

    Best Regards,

    Özge

  • Options
    varunm1varunm1 Moderator, Member Posts: 1,207 Unicorn
    Hi @ozgeozyazar

    I got your point. I see that you were using smote inside Adaboost, In my view, this should be applied just before AdaBoost because in your XML Adaboost is boosting unsampled data and then smote is applied which seems to minimize the impact of SMOTEboost technique.


    @mschmitz any insights here.
    Regards,
    Varun
    https://www.varunmandalapu.com/

    Be Safe. Follow precautions and Maintain Social Distancing

  • Options
    ozgeozyazarozgeozyazar Member Posts: 21 Maven
    Hi !
    @varunm1 I changed the model as you have indicated above and now I am getting this error.


    Even if I change the # of neighbours paremeter to 1,  unclick the equalize classes parameter and define the upsampling size I got this error. 

    What should I do for this ?
  • Options
    MartinLiebigMartinLiebig Administrator, Moderator, Employee, RapidMiner Certified Analyst, RapidMiner Certified Expert, University Professor Posts: 3,517 RM Data Scientist
    are you sure that you have minority class examples in your data set?

    Best,
    Martin
    - Sr. Director Data Solutions, Altair RapidMiner -
    Dortmund, Germany
  • Options
    varunm1varunm1 Moderator, Member Posts: 1,207 Unicorn
    edited May 2019
    Hello @ozgeozyazar

    I tried with titanic data set and it worked fine in that case. I can take a look if can get the data. To check the error, you can set a breakpoint before smote and observe class distribution coming i to SMOTE. 

    Thanks
    Regards,
    Varun
    https://www.varunmandalapu.com/

    Be Safe. Follow precautions and Maintain Social Distancing

  • Options
    ozgeozyazarozgeozyazar Member Posts: 21 Maven
    Dear @varunm1 and @mschmitz

    my minority class is negative class, Can it be a reason ? 
  • Options
    MartinLiebigMartinLiebig Administrator, Moderator, Employee, RapidMiner Certified Analyst, RapidMiner Certified Expert, University Professor Posts: 3,517 RM Data Scientist
    no, it cant. just add a breakpoint before smote and please check the number of minority data points.
    - Sr. Director Data Solutions, Altair RapidMiner -
    Dortmund, Germany
  • Options
    ozgeozyazarozgeozyazar Member Posts: 21 Maven
    @mschmitz

    48 for class 0 and 501 for class 1. 


  • Options
    MartinLiebigMartinLiebig Administrator, Moderator, Employee, RapidMiner Certified Analyst, RapidMiner Certified Expert, University Professor Posts: 3,517 RM Data Scientist

    Before SMOTE or before X-Val?

    BR,
    Martin
    - Sr. Director Data Solutions, Altair RapidMiner -
    Dortmund, Germany
  • Options
    ozgeozyazarozgeozyazar Member Posts: 21 Maven
    Hi @mschmitz

    Smote is inside the cross validation operator and this result appears before smote operator. 

    But I am also using optimize parameters and I realized that without parameter optimization I do not get this error. 

    Best Regards,
    Özge
  • Options
    varunm1varunm1 Moderator, Member Posts: 1,207 Unicorn
    Hello @ozgeozyazar

    That seems fine. Is there any that you can send data here or in Private Message on the community, so that we can take a look of what the issue is?

    Thank you
    Regards,
    Varun
    https://www.varunmandalapu.com/

    Be Safe. Follow precautions and Maintain Social Distancing

  • Options
    MartinLiebigMartinLiebig Administrator, Moderator, Employee, RapidMiner Certified Analyst, RapidMiner Certified Expert, University Professor Posts: 3,517 RM Data Scientist
    the problem is almost for sure, that in you roptimization there will be one fold, where you get 0 examples of the minority class. A work around could be to set the seed of X-Val to a constant one

    Best,
    Martin
    - Sr. Director Data Solutions, Altair RapidMiner -
    Dortmund, Germany
  • Options
    varunm1varunm1 Moderator, Member Posts: 1,207 Unicorn
    edited May 2019
    I applied the process on your data and it worked seamlessly without any errors. I tried using breakpoints but I don't see any discrepancies. I sent you the results and code in Private Message. 

    If you still have issues, you can inform here.

    Thanks
    Varun
    Regards,
    Varun
    https://www.varunmandalapu.com/

    Be Safe. Follow precautions and Maintain Social Distancing

  • Options
    ozgeozyazarozgeozyazar Member Posts: 21 Maven
    Dear @varunm1

    Thanks for your all efforts. 

    I have one more question. I would like to see the combined result of decision tree with AdaBoost. But I do not know if it is already exists or if I need to do additional things to get combined result. 

    Could you please help me ?

    Best Regards,

    Özge Özyazar
  • Options
    varunm1varunm1 Moderator, Member Posts: 1,207 Unicorn
    Hello @ozgeozyazar

    Do you mean you want Adaboost+decision tree results and Decision Tree alone results in the same process right? If this is what you were asking. Here is the XML. I set the seed 1992 for Cross-validation, so the data set is the same for both. You can find the attached .rmp file. Import this using (File --> Import Process) and you can change some repository locations and run it to see two performances (One fro AdaBoost+Decision Tree and the other one for Decision Tree only).

    Hope this helps

    Regards,
    Varun
    https://www.varunmandalapu.com/

    Be Safe. Follow precautions and Maintain Social Distancing

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